Aggregation Chimeric sequence detection Coding region prediction Codon usage analysis Codon usage table comparison Codon usage table formatting Comparison Conversion Database comparison Database search Data retrieval De-novo assembly Differential gene expression analysis DNA mapping Enrichment analysis EST assembly Filtering Formatting Format validation Gene component prediction Gene prediction Gene regulatory network prediction Genetic code prediction Genetic mapping Genome annotation Genome indexing Indel detection Map drawing Mapping Mapping assembly Multiple sequence alignment Nucleic acid feature detection Nucleic acid sequence analysis Nucleic acid sequence comparison Nucleic acid sequence feature detection Phylogenetic tree analysis Phylogenetic tree generation (from molecular sequences) Phylogenetic tree visualisation Protein sequence feature detection Protein SNP mapping Protein structural motif recognition Quantification Read mapping Regulatory element prediction Repeat sequence analysis RNA-seq read count analysis Scaffolding Sequence alignment refinement Sequence alignment visualisation Sequence analysis Sequence annotation Sequence assembly Sequence clustering Sequence complexity calculation Sequence composition calculation Sequence conversion Sequence coordinate conversion Sequence editing Sequence feature detection Sequence file editing Sequence masking Sequence merging Sequence motif analysis Sequence motif comparison Sequence motif discovery Sequence motif recognition Sequence similarity search Sequence tag mapping Sequence trimming Sequence visualisation Sequence word comparison Sequencing quality control Splitting Statistical calculation Taxonomic classification Text annotation Tree-based sequence alignment Validation Visualisation