Examples : samtools, bed, topic:conversion

17 tool(s) found

Tool Description Topics Available version(s)
Copernicus Atmosphere Data Store for retrieving data from the Atmosphere Monitoring Service Data retrieval Format detection Formatting 1
Copernicus Climate Data Store for retrieveing climate data Data retrieval Format detection Formatting 1
Copernicus Essential Climate Variables for assessing climate variability Data retrieval Format detection Formatting 2
Download and Extract Reads in BAM format from NCBI SRA Data retrieval Formatting 24
Download and Extract Reads in FASTQ format from NCBI SRA Data retrieval Formatting 20
Faster Download and Extract Reads in FASTQ format from NCBI SRA Data retrieval Formatting 15
Get Fasta from BioMAJ gets fasta genome corresponding to built-in indexes Data retrieval 1
NCBI BLAST+ blastdbcmd entry(s) Extract sequence(s) from BLAST database Data retrieval Database search 18
NCBI BLAST+ blastn Search nucleotide database with nucleotide query sequence(s) Data retrieval Database search Sequence similarity search 19
NCBI BLAST+ blastp Search protein database with protein query sequence(s) Data retrieval Database search Sequence similarity search 19
NCBI BLAST+ blastx Search protein database with translated nucleotide query sequence(s) Data retrieval Database search Sequence similarity search 18
NCBI BLAST+ database info Show BLAST database information from blastdbcmd Data retrieval 18
NCBI BLAST+ rpsblast Search protein domain database (PSSMs) with protein query sequence(s) Data retrieval Database search Sequence similarity search 17
NCBI BLAST+ rpstblastn Search protein domain database (PSSMs) with translated nucleotide query sequence(s) Data retrieval Database search Sequence similarity search 17
NCBI BLAST+ tblastn Search translated nucleotide database with protein query sequence(s) Data retrieval Database search Sequence similarity search 19
NCBI BLAST+ tblastx Search translated nucleotide database with translated nucleotide query sequence(s) Data retrieval Database search Sequence similarity search 19
Retrieve FASTA from NCBI Data retrieval 2