12 tool(s) found

Tool Description Topics Available version(s)
Delta-Filter Filters alignment (delta) file from nucmer Read mapping Sequence alignment 5
DNAdiff Evaluate similarities/differences between two sequences Read mapping Sequence alignment 5
Map with minimap2 A fast pairwise aligner for genomic and spliced nucleotide sequences Sequence alignment 18
Mummer Align two or more sequences Read mapping Sequence alignment 5
Mummerplot Generate 2-D dotplot of aligned sequences Read mapping Sequence alignment 5
Nucmer Align two or more sequences Read mapping Sequence alignment 5
RNA STAR Gapped-read mapper for RNA-seq data Mapping assembly Sequence alignment 17
RNA STARSolo mapping, demultiplexing and gene quantification for single cell RNA-seq Sequence alignment 7
Show-Coords Parse delta file and report coordinates and other information Read mapping Sequence alignment 5
Show-Tiling Parse delta file and report predicted location of each aligning query contig as mapped to the reference sequences. Read mapping Sequence alignment 1
TargetFinder plant small RNA target prediction tool Sequence alignment 2
Winnowmap a mapping tool optimized for repetitive sequences Sequence alignment 3