7 tool(s) found

Tool Description Topics Available version(s)
Breseq Variant Report - v0.26 Runs Breseq software on a set of fastq files DNA mapping Genetic mapping Genome annotation Mapping assembly Protein SNP mapping Sequence word comparison 1
cap3 Sequence Assembly tool DNA mapping Mapping Mapping assembly Sequence assembly 3
Map with BWA-MEM - map medium and long reads (> 100 bp) against reference genome DNA mapping Genetic mapping Genome annotation Mapping Mapping assembly Protein SNP mapping Sequence assembly Sequence tag mapping 16
Oases_optimiser Auto optimise de novo RNA-seq Oases/Velvet assembly De-novo assembly DNA mapping Mapping Mapping assembly Sequence assembly 3
Parallel Map with BWA for Illumina - map short reads (< 100 bp) against reference genome (mpi version) DNA mapping Genetic mapping Genome annotation Mapping Mapping assembly Protein SNP mapping Sequence assembly Sequence tag mapping 2
RNA STAR Gapped-read mapper for RNA-seq data Mapping assembly 9
sR_bowtie for small RNA short reads DNA mapping Mapping Mapping assembly Sequence assembly 8