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GalaxyCat
v0.4.3
Tools
Topics
Instances
About
Examples :
samtools
,
bed
,
topic:conversion
7 tool(s) found
Tool
Description
Topics
Available version(s)
Breseq Variant Report - v0.26
Runs Breseq software on a set of fastq files
DNA mapping
Genetic mapping
Genome annotation
Mapping assembly
Protein SNP mapping
Sequence word comparison
1
cap3
Sequence Assembly tool
DNA mapping
Mapping
Mapping assembly
Sequence assembly
3
Map with BWA-MEM
- map medium and long reads (> 100 bp) against reference genome
DNA mapping
Genetic mapping
Genome annotation
Mapping
Mapping assembly
Protein SNP mapping
Sequence assembly
Sequence tag mapping
17
Oases_optimiser
Auto optimise de novo RNA-seq Oases/Velvet assembly
De-novo assembly
DNA mapping
Mapping
Mapping assembly
Sequence assembly
3
Parallel Map with BWA for Illumina
- map short reads (< 100 bp) against reference genome (mpi version)
DNA mapping
Genetic mapping
Genome annotation
Mapping
Mapping assembly
Protein SNP mapping
Sequence assembly
Sequence tag mapping
2
RNA STAR
Gapped-read mapper for RNA-seq data
Mapping assembly
11
sR_bowtie
for small RNA short reads
DNA mapping
Mapping
Mapping assembly
Sequence assembly
8