6 tool(s) found

Tool Description Topics Available version(s)
Annotate smRNA dataset by iterative alignments with sRbowtie Mapping Sequence annotation 2
cap3 Sequence Assembly tool DNA mapping Mapping Mapping assembly Sequence assembly 3
Map with BWA-MEM - map medium and long reads (> 100 bp) against reference genome DNA mapping Genetic mapping Genome annotation Mapping Mapping assembly Protein SNP mapping Sequence assembly Sequence tag mapping 16
Oases_optimiser Auto optimise de novo RNA-seq Oases/Velvet assembly De-novo assembly DNA mapping Mapping Mapping assembly Sequence assembly 3
Parallel Map with BWA for Illumina - map short reads (< 100 bp) against reference genome (mpi version) DNA mapping Genetic mapping Genome annotation Mapping Mapping assembly Protein SNP mapping Sequence assembly Sequence tag mapping 2
sR_bowtie for small RNA short reads DNA mapping Mapping Mapping assembly Sequence assembly 8