Examples : samtools, bed, topic:conversion

8 tool(s) found

Tool Description Topics Available version(s)
Delta-Filter Filters alignment (delta) file from nucmer Read mapping Sequence alignment 5
DNAdiff Evaluate similarities/differences between two sequences Read mapping Sequence alignment 5
Mummer Align two or more sequences Read mapping Sequence alignment 5
Mummerplot Generate 2-D dotplot of aligned sequences Read mapping Sequence alignment 5
Nucmer Align two or more sequences Read mapping Sequence alignment 5
PhageTerm Determine Bacteriophage Termini and Packaging Mode using randomly fragmented NGS data. Read mapping 1
Show-Coords Parse delta file and report coordinates and other information Read mapping Sequence alignment 5
Show-Tiling Parse delta file and report predicted location of each aligning query contig as mapped to the reference sequences. Read mapping Sequence alignment 1