| Add column |
to an existing dataset |
Editing
|
2 |
| Aggregate datapoints |
Appends the average, min, max of datapoints per interval |
|
2 |
| BED-to-bigBed |
converter |
Conversion
|
2 |
| BED-to-GFF |
converter |
Conversion
|
2 |
| Change Case |
of selected columns |
|
2 |
| CML to SMILES |
|
|
3 |
| Compare two Datasets |
to find common or distinct rows |
Filtering
|
1 |
| Concatenate datasets |
tail-to-head |
Aggregation
|
1 |
| Convert |
delimiters to TAB |
|
1 |
| Convert BED to Feature Location Index |
|
|
1 |
| Convert BED to GFF |
|
|
2 |
| Convert Biom datasets |
|
|
1 |
| Convert CSV to tabular |
|
|
1 |
| Convert FASTA to 2bit |
|
|
2 |
| Convert FASTA to Bowtie base space Index |
|
|
2 |
| Convert FASTA to Bowtie color space Index |
|
|
2 |
| Convert FASTA to fai file |
|
|
1 |
| Convert FASTA to len file |
|
|
2 |
| Convert FASTA to Tabular |
|
|
1 |
| Convert genome coordinates |
between assemblies and genomes |
|
2 |
| Convert Genomic Intervals To BED |
|
|
1 |
| Convert Genomic Intervals To Coverage |
|
|
2 |
| Convert Genomic Intervals To Strict BED |
|
|
2 |
| Convert Genomic Intervals To Strict BED12 |
|
|
1 |
| Convert Genomic Intervals To Strict BED6 |
|
|
2 |
| Convert GFF to BED |
|
|
2 |
| Convert GFF to Feature Location Index |
|
|
1 |
| Convert Len file to Linecount |
|
|
2 |
| Convert lped to fped |
|
|
2 |
| Convert lped to plink pbed |
|
|
2 |
| Convert MAF to Fasta |
|
|
2 |
| Convert MAF to Genomic Intervals |
|
|
2 |
| Convert Picard Interval List to BED6 |
converter |
|
2 |
| Convert plink pbed to ld reduced format |
|
|
2 |
| Convert plink pbed to linkage lped |
|
|
2 |
| Convert Ref taxonomy to Seq Taxonomy |
converts 2 or 3 column sequence taxonomy file to a 2 column mothur taxonomy_outline format |
|
2 |
| Convert SAM to BAM without sorting |
|
|
1 |
| Convert tabular to CSV |
|
|
1 |
| Convert tabular to dbnsfp |
|
|
2 |
| Convert tar to directory |
|
|
2 |
| Convert uncompressed BCF to BCF |
|
|
1 |
| Count |
occurrences of each record |
|
2 |
| Create single interval |
as a new dataset |
|
1 |
| Cut |
columns from a table |
Filtering
|
2 |
| Data Fetch |
|
Query and retrieval
|
1 |
| DAVID |
functional annotation for a list of genes |
|
1 |
| Download and Extract Reads in BAM |
format from NCBI SRA |
|
22 |
| Download and Extract Reads in FASTA/Q |
format from NCBI SRA |
|
18 |
| Export datasets |
to remote files source |
|
1 |
| Extract features |
from GFF data |
|
1 |
| Extract MAF blocks |
given a set of genomic intervals |
|
3 |
| Extract MAF by block number |
given a set of block numbers and a MAF file |
|
1 |
| Extract Pairwise MAF blocks |
given a set of genomic intervals |
|
1 |
| Faster Download and Extract Reads in FASTQ |
format from NCBI SRA |
|
12 |
| fastp |
- fast all-in-one preprocessing for FASTQ files |
|
8 |
| Filter |
data on any column using simple expressions |
Formatting
|
2 |
| Filter GFF data by attribute |
using simple expressions |
|
3 |
| Filter GFF data by feature count |
using simple expressions |
|
2 |
| Filter GTF data by attribute values_list |
|
|
2 |
| Filter MAF |
by specified attributes |
|
1 |
| Filter MAF blocks |
by Species |
|
1 |
| Filter MAF blocks |
by Size |
|
1 |
| Flagstat |
tabulate descriptive stats for BAM datset |
|
8 |
| g:Profiler |
tools for functional profiling of gene lists |
|
1 |
| Gene BED To Exon/Intron/Codon BED |
expander |
|
1 |
| GFF-to-BED |
converter |
Conversion
|
2 |
| Group |
data by a column and perform aggregate operation on other columns. |
|
4 |
| InChI to MOL |
|
|
3 |
| Join MAF blocks |
by Species |
|
1 |
| Join two Datasets |
side by side on a specified field |
|
4 |
| LD |
linkage disequilibrium and tag SNPs |
|
1 |
| Line/Word/Character count |
of a dataset |
|
1 |
| MAF Coverage Stats |
Alignment coverage information |
|
3 |
| MAF to BED |
Converts a MAF formatted file to the BED format |
|
1 |
| MAF to FASTA |
Converts a MAF formatted file to FASTA format |
|
1 |
| MAF to Interval |
Converts a MAF formatted file to the Interval format |
|
1 |
| MAFFT |
Multiple alignment program for amino acid or nucleotide sequences |
|
7 |
| MAFFT add |
Align a sequence,alignment or fragments to an existing alignment. |
|
4 |
| Map with BWA |
- map short reads (< 100 bp) against reference genome |
|
11 |
| Map with BWA-MEM |
- map medium and long reads (> 100 bp) against reference genome |
DNA mapping
Genetic mapping
Genome annotation
Mapping
Mapping assembly
Protein SNP mapping
Sequence assembly
Sequence tag mapping
|
13 |
| Map with minimap2 |
A fast pairwise aligner for genomic and spliced nucleotide sequences |
Sequence alignment
|
18 |
| MasterVar to pgSnp |
Convert from MasterVar to pgSnp format |
|
1 |
| Merge Columns |
together |
|
4 |
| MOL2 to MOL |
|
|
3 |
| observable |
|
|
1 |
| OpenBabel converter for molecular formats |
|
|
1 |
| Paste |
two files side by side |
|
1 |
| QualiMap BamQC |
|
|
5 |
| Remove beginning |
of a file |
|
1 |
| Reverse Complement |
a MAF file |
|
1 |
| samtools mpileup |
multi-way pileup of variants |
|
11 |
| Samtools sort |
order of storing aligned sequences |
|
7 |
| Samtools stats |
generate statistics for BAM dataset |
|
6 |
| Secure Hash / Message Digest |
on a dataset |
|
2 |
| Select |
lines that match an expression |
Filtering
|
3 |
| Select first |
lines from a dataset |
Filtering
|
3 |
| Select last |
lines from a dataset |
|
2 |
| Select random lines |
from a file |
|
2 |
| Send to cloud |
|
|
1 |
| SFF converter |
|
|
1 |
| SMILES to MOL |
|
|
3 |
| SMILES to SMILES |
|
|
3 |
| Sort |
data in ascending or descending order |
|
3 |
| Split MAF blocks |
by Species |
|
1 |
| Stitch Gene blocks |
given a set of coding exon intervals |
|
4 |
| Stitch MAF blocks |
given a set of genomic intervals |
|
1 |
| Summary Statistics |
for any numerical column |
|
3 |
| Trim |
leading or trailing characters |
|
2 |
| Upload File |
from your computer |
Query and retrieval
|
3 |
| VCF to MAF Custom Track |
for display at UCSC |
|
2 |
| Wig/BedGraph-to-bigWig |
converter |
|
2 |
| Wiggle to Interval |
|
|
2 |
| Wiggle-to-Interval |
converter |
|
2 |