113 tool(s) found

Tool Description Topics Available version(s)
Add column to an existing dataset Editing 2
Aggregate datapoints Appends the average, min, max of datapoints per interval 2
BED-to-bigBed converter Conversion 2
BED-to-GFF converter Conversion 2
Change Case of selected columns 2
CML to SMILES 3
Compare two Datasets to find common or distinct rows Filtering 1
Concatenate datasets tail-to-head Aggregation 1
Convert delimiters to TAB 1
Convert BED to Feature Location Index 1
Convert BED to GFF 2
Convert Biom datasets 1
Convert CSV to tabular 1
Convert FASTA to 2bit 2
Convert FASTA to Bowtie base space Index 2
Convert FASTA to Bowtie color space Index 2
Convert FASTA to fai file 1
Convert FASTA to len file 2
Convert FASTA to Tabular 1
Convert genome coordinates between assemblies and genomes 2
Convert Genomic Intervals To BED 1
Convert Genomic Intervals To Coverage 2
Convert Genomic Intervals To Strict BED 2
Convert Genomic Intervals To Strict BED12 1
Convert Genomic Intervals To Strict BED6 2
Convert GFF to BED 2
Convert GFF to Feature Location Index 1
Convert Len file to Linecount 2
Convert lped to fped 2
Convert lped to plink pbed 2
Convert MAF to Fasta 2
Convert MAF to Genomic Intervals 2
Convert Picard Interval List to BED6 converter 2
Convert plink pbed to ld reduced format 2
Convert plink pbed to linkage lped 2
Convert Ref taxonomy to Seq Taxonomy converts 2 or 3 column sequence taxonomy file to a 2 column mothur taxonomy_outline format 2
Convert SAM to BAM without sorting 1
Convert tabular to CSV 1
Convert tabular to dbnsfp 2
Convert tar to directory 2
Convert uncompressed BCF to BCF 1
Count occurrences of each record 2
Create single interval as a new dataset 1
Cut columns from a table Filtering 2
Data Fetch Query and retrieval 1
DAVID functional annotation for a list of genes 1
Download and Extract Reads in BAM format from NCBI SRA 22
Download and Extract Reads in FASTA/Q format from NCBI SRA 18
Export datasets to remote files source 1
Extract features from GFF data 1
Extract MAF blocks given a set of genomic intervals 3
Extract MAF by block number given a set of block numbers and a MAF file 1
Extract Pairwise MAF blocks given a set of genomic intervals 1
Faster Download and Extract Reads in FASTQ format from NCBI SRA 12
fastp - fast all-in-one preprocessing for FASTQ files 8
Filter data on any column using simple expressions Formatting 2
Filter GFF data by attribute using simple expressions 3
Filter GFF data by feature count using simple expressions 2
Filter GTF data by attribute values_list 2
Filter MAF by specified attributes 1
Filter MAF blocks by Species 1
Filter MAF blocks by Size 1
Flagstat tabulate descriptive stats for BAM datset 8
g:Profiler tools for functional profiling of gene lists 1
Gene BED To Exon/Intron/Codon BED expander 1
GFF-to-BED converter Conversion 2
Group data by a column and perform aggregate operation on other columns. 4
InChI to MOL 3
Join MAF blocks by Species 1
Join two Datasets side by side on a specified field 4
LD linkage disequilibrium and tag SNPs 1
Line/Word/Character count of a dataset 1
MAF Coverage Stats Alignment coverage information 3
MAF to BED Converts a MAF formatted file to the BED format 1
MAF to FASTA Converts a MAF formatted file to FASTA format 1
MAF to Interval Converts a MAF formatted file to the Interval format 1
MAFFT Multiple alignment program for amino acid or nucleotide sequences 7
MAFFT add Align a sequence,alignment or fragments to an existing alignment. 4
Map with BWA - map short reads (< 100 bp) against reference genome 11
Map with BWA-MEM - map medium and long reads (> 100 bp) against reference genome DNA mapping Genetic mapping Genome annotation Mapping Mapping assembly Protein SNP mapping Sequence assembly Sequence tag mapping 13
Map with minimap2 A fast pairwise aligner for genomic and spliced nucleotide sequences Sequence alignment 18
MasterVar to pgSnp Convert from MasterVar to pgSnp format 1
Merge Columns together 4
MOL2 to MOL 3
observable 1
OpenBabel converter for molecular formats 1
Paste two files side by side 1
QualiMap BamQC 5
Remove beginning of a file 1
Reverse Complement a MAF file 1
samtools mpileup multi-way pileup of variants 11
Samtools sort order of storing aligned sequences 7
Samtools stats generate statistics for BAM dataset 6
Secure Hash / Message Digest on a dataset 2
Select lines that match an expression Filtering 3
Select first lines from a dataset Filtering 3
Select last lines from a dataset 2
Select random lines from a file 2
Send to cloud 1
SFF converter 1
SMILES to MOL 3
SMILES to SMILES 3
Sort data in ascending or descending order 3
Split MAF blocks by Species 1
Stitch Gene blocks given a set of coding exon intervals 4
Stitch MAF blocks given a set of genomic intervals 1
Summary Statistics for any numerical column 3
Trim leading or trailing characters 2
Upload File from your computer Query and retrieval 3
VCF to MAF Custom Track for display at UCSC 2
Wig/BedGraph-to-bigWig converter 2
Wiggle to Interval 2
Wiggle-to-Interval converter 2