| Add column |
to an existing dataset |
Editing
|
2 |
| Aggregate datapoints |
Appends the average, min, max of datapoints per interval |
|
2 |
| bcf_uncompressed-to-bcf |
converter |
|
1 |
| BED-to-bigBed |
converter |
Conversion
|
2 |
| BED-to-GFF |
converter |
Conversion
|
1 |
| BLAST XML to tabular |
Convert BLAST XML output to tabular |
Conversion
|
18 |
| Change Case |
of selected columns |
|
2 |
| CML to InChI |
|
|
2 |
| CML to mol2 |
|
|
2 |
| CML to SDF |
|
|
2 |
| cml-to-smi |
converter |
|
2 |
| COAST - Report generator |
Recreate the report and outputs with different settings |
|
2 |
| Compare two Datasets |
to find common or distinct rows |
Filtering
|
1 |
| Concatenate datasets |
tail-to-head |
Aggregation
|
1 |
| Convert |
delimiters to TAB |
|
1 |
| Convert BCF to uncompressed BCF |
|
|
1 |
| Convert BED to Feature Location Index |
|
|
1 |
| Convert BED to GFF |
|
|
2 |
| Convert Biom1 to Biom2 |
|
|
1 |
| Convert Biom2 to Biom1 |
|
|
1 |
| Convert FASTA to 2bit |
|
|
2 |
| Convert FASTA to Bowtie base space Index |
|
|
2 |
| Convert FASTA to Bowtie color space Index |
|
|
2 |
| Convert FASTA to len file |
|
|
2 |
| Convert FASTA to Tabular |
|
|
1 |
| Convert genome coordinates |
between assemblies and genomes |
|
2 |
| Convert Genomic Intervals To BED |
|
|
1 |
| Convert Genomic Intervals To Coverage |
|
|
2 |
| Convert Genomic Intervals To Strict BED |
|
|
2 |
| Convert Genomic Intervals To Strict BED12 |
|
|
1 |
| Convert Genomic Intervals To Strict BED6 |
|
|
2 |
| Convert GFF to BED |
|
|
2 |
| Convert GFF to Feature Location Index |
|
|
1 |
| Convert Len file to Linecount |
|
|
2 |
| Convert lped to fped |
|
|
2 |
| Convert lped to plink pbed |
|
|
2 |
| Convert MAF to Fasta |
|
|
2 |
| Convert MAF to Genomic Intervals |
|
|
2 |
| Convert Picard Interval List to BED6 |
converter |
|
2 |
| Convert plink pbed to ld reduced format |
|
|
2 |
| Convert plink pbed to linkage lped |
|
|
2 |
| Count |
occurrences of each record |
|
2 |
| Create single interval |
as a new dataset |
|
1 |
| csv-to-tabular |
converter |
|
1 |
| Cut |
columns from a table |
Filtering
|
2 |
| Data Fetch |
|
Query and retrieval
|
1 |
| DAVID |
functional annotation for a list of genes |
|
1 |
| dbnsfp.tabular-to-snpsiftdbnsfp |
converter |
|
3 |
| Extract features |
from GFF data |
|
1 |
| Extract MAF blocks |
given a set of genomic intervals |
|
4 |
| Extract MAF by block number |
given a set of block numbers and a MAF file |
|
1 |
| Extract Pairwise MAF blocks |
given a set of genomic intervals |
|
1 |
| fasta-to-fai |
converter |
|
1 |
| Filter |
data on any column using simple expressions |
Formatting
|
2 |
| Filter GFF data by attribute |
using simple expressions |
|
2 |
| Filter GFF data by feature count |
using simple expressions |
|
1 |
| Filter GTF data by attribute values_list |
|
|
2 |
| Filter MAF |
by specified attributes |
|
1 |
| Filter MAF blocks |
by Species |
|
1 |
| Filter MAF blocks |
by Size |
|
1 |
| g:Profiler |
tools for functional profiling of gene lists |
|
1 |
| Gene BED To Exon/Intron/Codon BED |
expander |
|
1 |
| GFF-to-BED |
converter |
Conversion
|
1 |
| Group |
data by a column and perform aggregate operation on other columns. |
|
4 |
| InChI to CML |
|
|
2 |
| InChI to MOL2 |
|
|
2 |
| InChI to SDF |
|
|
2 |
| InChI to SMILES |
|
|
2 |
| inchi-to-mol |
converter |
|
2 |
| Join MAF blocks |
by Species |
|
1 |
| Join two Datasets |
side by side on a specified field |
|
4 |
| LD |
linkage disequilibrium and tag SNPs |
|
1 |
| Line/Word/Character count |
of a dataset |
|
1 |
| MAF Coverage Stats |
Alignment coverage information |
|
3 |
| MAF to BED |
Converts a MAF formatted file to the BED format |
|
1 |
| MAF to FASTA |
Converts a MAF formatted file to FASTA format |
|
1 |
| MAF to Interval |
Converts a MAF formatted file to the Interval format |
|
1 |
| MasterVar to pgSnp |
Convert from MasterVar to pgSnp format |
|
1 |
| Merge Columns |
together |
|
4 |
| MOL to CML |
|
|
2 |
| MOL to MOL2 |
|
|
2 |
| MOL to SMILES |
|
|
2 |
| MOL2 to CML |
|
|
2 |
| MOL2 to InChI |
|
|
2 |
| MOL2 to SDF |
|
|
2 |
| MOL2 to SMILES |
|
|
2 |
| mol2-to-mol |
converter |
|
2 |
| mothur.ref.taxonomy-to-mothur.seq.taxonomy |
converter |
|
2 |
| NCBI BLAST+ blastdbcmd entry(s) |
Extract sequence(s) from BLAST database |
Data retrieval
Database search
|
18 |
| NCBI BLAST+ blastn |
Search nucleotide database with nucleotide query sequence(s) |
Data retrieval
Database search
Sequence similarity search
|
19 |
| NCBI BLAST+ blastp |
Search protein database with protein query sequence(s) |
Data retrieval
Database search
Sequence similarity search
|
19 |
| NCBI BLAST+ blastx |
Search protein database with translated nucleotide query sequence(s) |
Data retrieval
Database search
Sequence similarity search
|
18 |
| NCBI BLAST+ convert2blastmask |
Convert masking information in lower-case masked FASTA input to file formats suitable for makeblastdb |
Conversion
|
15 |
| NCBI BLAST+ database info |
Show BLAST database information from blastdbcmd |
Data retrieval
|
18 |
| NCBI BLAST+ dustmasker |
masks low complexity regions |
Sequence complexity calculation
|
16 |
| NCBI BLAST+ makeblastdb |
Make BLAST database |
Genome indexing
|
18 |
| NCBI BLAST+ makeprofiledb |
Make profile database |
Genome indexing
|
14 |
| NCBI BLAST+ rpsblast |
Search protein domain database (PSSMs) with protein query sequence(s) |
Data retrieval
Database search
Sequence similarity search
|
17 |
| NCBI BLAST+ rpstblastn |
Search protein domain database (PSSMs) with translated nucleotide query sequence(s) |
Data retrieval
Database search
Sequence similarity search
|
17 |
| NCBI BLAST+ segmasker |
low-complexity regions in protein sequences |
Sequence complexity calculation
|
15 |
| NCBI BLAST+ tblastn |
Search translated nucleotide database with protein query sequence(s) |
Data retrieval
Database search
Sequence similarity search
|
19 |
| NCBI BLAST+ tblastx |
Search translated nucleotide database with translated nucleotide query sequence(s) |
Data retrieval
Database search
Sequence similarity search
|
19 |
| Paste |
two files side by side |
|
1 |
| PhageCOAST - Search |
Run a new job, and identify the closest proteomes |
|
2 |
| PhageDPO |
Phage Depolymerase Finder |
|
1 |
| PhageHostPrediction |
prediction of phage-bacteria interactions |
|
1 |
| PhagePromoter |
Get promoters of phage genomes |
|
1 |
| Remove beginning |
of a file |
|
1 |
| Reverse Complement |
a MAF file |
|
1 |
| sam-to-unsorted.bam |
converter |
|
1 |
| SDF to CML |
|
|
2 |
| SDF to InChI |
|
|
2 |
| SDF to mol2 |
|
|
2 |
| SDF to SMILES |
|
|
2 |
| Secure Hash / Message Digest |
on a dataset |
|
2 |
| Select |
lines that match an expression |
Filtering
|
3 |
| Select first |
lines from a dataset |
Filtering
|
4 |
| Select last |
lines from a dataset |
|
2 |
| Select random lines |
from a file |
|
2 |
| Send to cloud |
|
|
1 |
| SFF converter |
|
|
1 |
| smi-to-mol |
converter |
|
2 |
| smi-to-smi |
converter |
|
2 |
| SMILES to CML |
|
|
2 |
| SMILES to InChI |
|
|
2 |
| SMILES to MOL2 |
|
|
2 |
| SMILES to SDF |
|
|
2 |
| Sort |
data in ascending or descending order |
Sorting
|
3 |
| Split MAF blocks |
by Species |
|
1 |
| Stitch Gene blocks |
given a set of coding exon intervals |
|
4 |
| Stitch MAF blocks |
given a set of genomic intervals |
|
1 |
| Summary Statistics |
for any numerical column |
|
3 |
| tabular-to-csv |
converter |
|
1 |
| tar-to-directory |
converter |
|
2 |
| Trim |
leading or trailing characters |
|
2 |
| Upload File |
from your computer |
Query and retrieval
|
3 |
| VCF to MAF Custom Track |
for display at UCSC |
|
2 |
| Wig/BedGraph-to-bigWig |
converter |
|
2 |
| Wiggle to Interval |
|
|
2 |
| Wiggle-to-Interval |
converter |
|
2 |