Toggle navigation
GalaxyCat
v0.5.0
Tools
Topics
Instances
About
Examples :
samtools
,
bed
,
topic:conversion
15 tool(s) found
Tool
Description
Topics
Available version(s)
Compare two Datasets
to find common or distinct rows
Filtering
1
Coverage
of a set of intervals on second set of intervals
Comparison
Filtering
5
Cut
columns from a table
Filtering
2
Fetch closest non-overlapping feature
for every interval
Filtering
4
Filter by quality
Filtering
6
Filter FASTQ
reads by quality score and length
Filtering
4
Filter SAM or BAM
files on FLAG MAPQ RG LN or by region
Filtering
Nucleic acid sequence analysis
2
Filter sequences by length
Filtering
6
FROGS Pre-process
merging, denoising and dereplication.
Filtering
5
Intersect
the intervals of two datasets
Filtering
6
Pick Fasta sequences
with header satisfying a string query
Filtering
2
Quality-aware fastq demultiplexer
This program demultiplexes fastq data having "in-line" barcodes, based on a given list of barcodes and a barcode start position. It tries to assign each fastq record to the most likely barcode, taking into account the sequence qualities (interpreted as being Sanger-encoded).
Filtering
Splitting
1
Select
lines that match an expression
Filtering
3
Select first
lines from a dataset
Filtering
4
Subtract
the intervals of two datasets
Filtering
6