Examples : samtools, bed, topic:conversion

17 tool(s) found

Tool Description Topics Available version(s)
animalerie-wf Taxonomic classification 1
biomarker_discovery_wf Taxonomic classification 1
FROGS Affiliation OTU Taxonomic affiliation of each OTU's seed by RDPtools and BLAST Taxonomic classification 5
FROGS Affiliation postprocess Optionnal step to resolve inclusive amplicon ambiguities and to aggregate OTUs based on alignment metrics Taxonomic classification 5
FROGS Affiliations stat Process some metrics on taxonomies. Taxonomic classification 5
FROGS Clustering swarm Single-linkage clustering on sequences Taxonomic classification 5
FROGS Filters Filters OTUs on several criteria. Taxonomic classification 2
FROGS Tree Reconstruction of phylogenetic tree Taxonomic classification 5
FROGSSTAT Phyloseq Alpha Diversity with richness plot Taxonomic classification 5
FROGSSTAT Phyloseq Beta Diversity distance matrix Taxonomic classification 5
FROGSSTAT Phyloseq Composition Visualisation with bar plot and composition plot Taxonomic classification 5
FROGSSTAT Phyloseq Import Data from 3 files: biomfile, samplefile, treefile Taxonomic classification 5
FROGSSTAT Phyloseq Multivariate Analysis Of Variance perform Multivariate Analysis of Variance (MANOVA) Taxonomic classification 5
FROGSSTAT Phyloseq Sample Clustering of samples using different linkage methods Taxonomic classification 5
FROGSSTAT Phyloseq Structure Visualisation with heatmap plot and ordination plot Taxonomic classification 5
PCM Taxonomic classification 1
Recentrifuge Robust comparative analysis and contamination removal for metagenomics Statistical calculation Taxonomic classification 3