Examples : samtools, bed, topic:conversion

19 tool(s) found

Tool Description Topics Available version(s)
Barplot stratified HUMAnN features Nucleic acid sequence analysis Phylogenetic analysis 3
Customize the marker sequences and metadata from the MetaPhlAn database Nucleic acid sequence analysis Phylogenetic analysis 6
Extract the marker sequences and metadata from the MetaPhlAn database Nucleic acid sequence analysis Phylogenetic analysis 6
Filter SAM or BAM files on FLAG MAPQ RG LN or by region Filtering Nucleic acid sequence analysis 2
HUMAnN to profile presence/absence and abundance of microbial pathways and gene families Nucleic acid sequence analysis Phylogenetic analysis 2
Join (merge) gene, pathway, or taxonomy HUMAnN/MetaPhlAn tables into a single table Nucleic acid sequence analysis Phylogenetic analysis 2
Make strain profiles Nucleic acid sequence analysis Phylogenetic analysis 2
Merge MetaPhlAn abundance tables Nucleic acid sequence analysis Phylogenetic analysis 8
MetaPhlAn to profile the composition of microbial communities Nucleic acid sequence analysis Phylogenetic analysis 7
Normalize combined meta'omic sequencing data Nucleic acid sequence analysis Phylogenetic analysis 2
Perform metadata association on HUMAnN generated table Nucleic acid sequence analysis Phylogenetic analysis 2
Reduce a joined HUMAnN table Nucleic acid sequence analysis Phylogenetic analysis 2
Regroup HUMAnN table features Nucleic acid sequence analysis Phylogenetic analysis 2
Rename features of a HUMAnN generated table Nucleic acid sequence analysis Phylogenetic analysis 2
Renormalize a HUMAnN generated table Nucleic acid sequence analysis Phylogenetic analysis 3
Salmonella CRISPR Typing identify known spacers and DRs for Salmonella. Nucleic acid sequence analysis Sequence motif recognition 1
Split a merged HUMAnN table Nucleic acid sequence analysis Phylogenetic analysis 2
Split a HUMAnN table into 2 tables (one stratified and one unstratified) Nucleic acid sequence analysis Phylogenetic analysis 3
Unpack pathway abundances to show the genes for each Nucleic acid sequence analysis Phylogenetic analysis 3