6 tool(s) found

Tool Description Topics Available version(s)
Cutadapt Remove adapter sequences from FASTQ/FASTA Sequence editing 22
fqduplicate Detect duplicate reads. Outputs a list of read names corresponding to reads already seen in the dataset with a better quality sum score (duplicates) Repeat sequence analysis Sequence editing 2
fqextract: Pasteur fastq read extractor Extract a subset of fastq reads Sequence editing 2
fqquality Output reads with low quality bases trimmed (at the extremities) or masked and/or with quality descreased to the minimum. Output an extra singlet dataset if paired-end data provided. Sequence editing 2
fqseqname "List names of sequences from FASTQ formatted files" Sequence editing 2
html4blast Create a html report from a blast result Sequence editing 1