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GalaxyCat
v0.5.0
Tools
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Examples :
samtools
,
bed
,
topic:conversion
46 tool(s) found
Tool
Description
Topics
Available version(s)
Associate FLOCK populations
with cell ontology
1
Autoclustering analysis
using MetaCyto
1
Check data
in txt-converted FCS files
1
Check headers
of any set of flowtext files
1
Check markers in analysis panels
for MetaCyto
1
Collapse populations
from FLOCK or Cross Sample analysis
1
Collapse populations automatically
based on quartile binning from FLOCK results
1
Compare Samples
using a FlowSOM tree
1
Convert FCS to Text
with no transformation
1
Copy Shared Data FCS Files as a Collection
1
Copy Shared Data FCS Files as Individual Datasets
1
csv-to-tabular
converter
1
Data Fetch
Query and retrieval
1
Edit markers or channels
in FCS files
1
Explore cell ontology
given a phenotype using flowCL
1
Extract keywords
from FCS files
1
Extract populations
of interest from FLOCK or Cross Sample output
1
flowAI
automatic quality control
1
Generate 1D density plots
for FCS file
1
Generate a heat map
of a flow analysis using Clustergrammer
1
Generate a reference Self Organizing Map
using FlowSOM.
1
Generate histograms
of MetaCyto's clustering results
1
Generate overview information
of reference set of clusters or populations.
1
Generate overview information
of a multi-sample analysis.
1
Generate scatter plots
for any given markers in FCS file
1
Generate scatter plots
for any given markers in a txt-converted FCS file
1
Generate stacked density plots
for a set of FCS files
1
Generate summary statistics
of FLOCK output
1
Generate the centroids
from a flow result file
1
Get list of markers
and channels in FCS files
1
Get summary
of FCS files
1
Get summary
of txt-converted FCS files
1
Guided identification of clusters
using MetaCyto
1
Map individual FCS to reference SOM
using FlowSOM.
1
Merge and downsample
FCS files with FlowSOM
1
Merge and downsample
txt-converted FCS files into one text file based on headers
1
Metadata analysis of a given cluster definition
using MetaCyto's generalized linear model analysis
1
Metadata analysis of all data
using MetaCyto's generalized linear model analysis
1
Pre-process samples
for MetaCyto
1
Remove, rearrange and/or rename columns
in txt-converted FCS files
1
Run Cross Sample
using a Flow file that was run using FLOCK
1
Run FLOCK
using a FCS file that was converted/transformed to a text file
1
tabular-to-csv
converter
1
tar-to-directory
converter
2
Transform FCS data
with optional compensation and automated gating with flowDensity.
1
Upload File
from your computer
Query and retrieval
3