QualityControl Computes various QC metrics from many possible input files (only the consensusXML is required). The more optional files you provide, the more metrics you get.

QualityControl

Version Tool Shed Owner Galaxy instances where the tool is available
2.6+galaxy0 toolshed.g2.bx.psu.edu galaxyp
2.5+galaxy0 toolshed.g2.bx.psu.edu galaxyp