snippy Snippy finds SNPs between a haploid reference genome and your NGS sequence reads.

snippy

Version	Tool Shed	Owner	Galaxy instances where the tool is available
4.6.0+galaxy0	toolshed.g2.bx.psu.edu	iuc	galaxy.genouest.org usegalaxy.eu usegalaxy.fr usegalaxy.no usegalaxy.org usegalaxy.org.au
4.5.0+galaxy1	toolshed.g2.bx.psu.edu	iuc	galaxy.genouest.org usegalaxy.eu usegalaxy.no usegalaxy.org.au
4.5.0	toolshed.g2.bx.psu.edu	iuc	galaxy.genouest.org usegalaxy.be usegalaxy.eu usegalaxy.no usegalaxy.org usegalaxy.org.au
4.4.5+galaxy2	toolshed.g2.bx.psu.edu	iuc	galaxy.genouest.org usegalaxy.be usegalaxy.eu usegalaxy.org
4.4.5+galaxy1	toolshed.g2.bx.psu.edu	iuc	usegalaxy.be usegalaxy.eu usegalaxy.org
4.4.5+galaxy0	toolshed.g2.bx.psu.edu	iuc	usegalaxy.be usegalaxy.eu usegalaxy.org
4.4.3+galaxy0	toolshed.g2.bx.psu.edu	iuc	usegalaxy.be usegalaxy.eu
4.3.6+galaxy2	toolshed.g2.bx.psu.edu	iuc	usegalaxy.be usegalaxy.eu
4.3.6+galaxy1	toolshed.g2.bx.psu.edu	iuc	usegalaxy.be usegalaxy.eu
3.2+galaxy1	toolshed.g2.bx.psu.edu	iuc	usegalaxy.be usegalaxy.eu usegalaxy.no
3.2	toolshed.g2.bx.psu.edu	iuc	usegalaxy.be usegalaxy.eu usegalaxy.no