Filter SAM or BAM, output SAM or BAM files on FLAG MAPQ RG LN or by region

samtool_filter2

Version	Tool Shed	Owner	Galaxy instances where the tool is available
1.8+galaxy1	testtoolshed.g2.bx.psu.edu	devteam	galaxy.hyphy.org
1.8+galaxy1	toolshed.g2.bx.psu.edu	devteam	galaxy.genouest.org galaxy.mesocentre.uca.fr treegenes.cam.uchc.edu usegalaxy.be usegalaxy.eu usegalaxy.fr usegalaxy.no usegalaxy.org usegalaxy.org.au
1.8	toolshed.g2.bx.psu.edu	devteam	bipaa-galaxy.genouest.org usegalaxy.be usegalaxy.eu usegalaxy.fr usegalaxy.org usegalaxy.org.au
1.1.2	toolshed.g2.bx.psu.edu	devteam	bipaa-galaxy.genouest.org
1.1.2	toolshed.g2.bx.psu.edu	devteam	usegalaxy.be usegalaxy.eu usegalaxy.org
1.1.1	toolshed.g2.bx.psu.edu	devteam	usegalaxy.be usegalaxy.eu usegalaxy.org