LAST-split finds "split alignments" (typically for DNA) or "spliced alignments" (typically for RNA).

last_split

Version	Tool Shed	Owner	Galaxy instances where the tool is available
1205+galaxy0	toolshed.g2.bx.psu.edu	iuc	galaxy.genouest.org usegalaxy.eu usegalaxy.fr usegalaxy.no
1021+galaxy0	toolshed.g2.bx.psu.edu	iuc	usegalaxy.be
1021+galaxy0	toolshed.g2.bx.psu.edu	iuc	galaxy.genouest.org galaxy.sb-roscoff.fr usegalaxy.eu
1021+galaxy0	toolshed.g2.bx.psu.edu	iuc	usegalaxy.fr usegalaxy.no