174 tool(s) found

Tool Description Topics Available version(s)
Add column to an existing dataset Editing 2
Advanced Cut columns from a table (cut) 8
Aggregate datapoints Appends the average, min, max of datapoints per interval 2
BEAM significant single- and multi-locus SNP associations in case-control studies 1
BED-to-bigBed converter Conversion 2
BED-to-GFF converter Conversion 2
Change Case of selected columns 2
CML to InChI 3
CML to mol2 3
CML to SDF 3
CML to SMILES 3
Compare two Datasets to find common or distinct rows Filtering 1
Compute quality statistics for SOLiD data 1
Concatenate datasets tail-to-head (cat) 10
Concatenate multiple datasets tail-to-head 4
Condense consecutive characters 2
Convert delimiters to TAB 1
Convert SOLiD output to fastq 1
Convert BCF to uncompressed BCF 1
Convert BED to Feature Location Index 1
Convert BED to GFF 2
Convert Biom1 to Biom2 1
Convert Biom2 to Biom1 1
Convert CSV to tabular 1
Convert FASTA to 2bit 2
Convert FASTA to Bowtie base space Index 2
Convert FASTA to Bowtie color space Index 2
Convert FASTA to fai file 1
Convert FASTA to len file 2
Convert FASTA to Tabular 1
Convert genome coordinates between assemblies and genomes 2
Convert Genomic Intervals To BED 1
Convert Genomic Intervals To Coverage 2
Convert Genomic Intervals To Strict BED 2
Convert Genomic Intervals To Strict BED12 1
Convert Genomic Intervals To Strict BED6 2
Convert GFF to BED 2
Convert GFF to Feature Location Index 1
Convert Len file to Linecount 2
Convert lped to fped 2
Convert lped to plink pbed 2
Convert MAF to Fasta 2
Convert MAF to Genomic Intervals 2
Convert Picard Interval List to BED6 converter 2
Convert plink pbed to ld reduced format 2
Convert plink pbed to linkage lped 2
Convert Ref taxonomy to Seq Taxonomy converts 2 or 3 column sequence taxonomy file to a 2 column mothur taxonomy_outline format 2
Convert SAM to BAM without sorting 1
Convert tabular to CSV 1
Convert tabular to dbnsfp 2
Convert tar to directory 2
Convert uncompressed BCF to BCF 1
Count occurrences of each record 2
Create single interval as a new dataset 1
Create text file with recurring lines 8
Data Fetch Query and retrieval 1
DAVID functional annotation for a list of genes 1
Draw quality score boxplot for SOLiD data 1
Extract features from GFF data 1
Extract Genomic DNA using coordinates from assembled/unassembled genomes 7
Extract MAF blocks given a set of genomic intervals 3
Extract MAF by block number given a set of block numbers and a MAF file 1
Extract Pairwise MAF blocks given a set of genomic intervals 1
Filter data on any column using simple expressions Formatting 2
Filter GFF data by attribute using simple expressions 3
Filter GFF data by feature count using simple expressions 2
Filter GTF data by attribute values_list 2
Filter MAF by specified attributes 1
Filter MAF blocks by Species 1
Filter MAF blocks by Size 1
Find Mitochondrial Protein gives information whether a given protein has a mitochondrial function 1
Find reference nucleotide searches the Nucleotide present in rCRS sequence 1
Find SNP in MitoLSDB Search the presence of given SNP in MitoLSDB database 1
g:Profiler tools for functional profiling of gene lists 1
Gene BED To Exon/Intron/Codon BED expander 1
Gene Mapping searches a genomic position from a gene location 1
Gene sequence retrieval returns the reference sequence of a gene from rCRS 1
Genomic to Gene Mapping using the Genomic postion 1
GFF-to-BED converter Conversion 2
GPASS significant single-SNP associations in case-control studies 1
Group data by a column and perform aggregate operation on other columns. 4
Hexadecimal to ASCII converts the imported MtBrowse data into gff file 1
InChI to CML 3
InChI to MOL 3
InChI to MOL2 3
InChI to SDF 3
InChI to SMILES 3
Join the intervals of two datasets side-by-side Aggregation 4
Join two files 11
Join MAF blocks by Species 1
Join two Datasets side by side on a specified field 4
LD linkage disequilibrium and tag SNPs 1
Line/Word/Character count of a dataset 1
LPS LASSO-Patternsearch algorithm 1
MAF Coverage Stats Alignment coverage information 3
MAF to BED Converts a MAF formatted file to the BED format 1
MAF to FASTA Converts a MAF formatted file to FASTA format 1
MAF to Interval Converts a MAF formatted file to the Interval format 1
MasterVar to pgSnp Convert from MasterVar to pgSnp format 1
Merge Columns together 4
Mitimpact Prediction on Mitochondrial mutation 1
MOL to CML 3
MOL to MOL2 3
MOL to SMILES 3
MOL2 to CML 3
MOL2 to InChI 3
MOL2 to MOL 3
MOL2 to SDF 3
MOL2 to SMILES 3
MtBrowse Exporter - send data to MtBrowse 1
MtSNPscore scores the mitochondrial SNP for their role in disease causation 1
MtSNPscore Patient Score produces a scoring file for all the patients listed in input data 1
MtSNPscore SNPscore produces a scoring file for all input variation data 1
MtSNPscore Statistics produces a file containing performance statistics after comparing input variation data with selected population data 1
MtSNPscore Summary produces a summary file for the input Variation data 1
Multi-Join (combine multiple files) 9
PASS significant transcription factor binding sites from ChIP data 1
Paste two files side by side 1
Polyphen prediction on all possible SNPs of mtDNA and nDNA encoded mitochondrial proteins 1
Polyphen(under testing) prediction on all possible SNPs of mtDNA and nDNA encoded mitochondrial proteins 1
PrDSM for Prediction of Deleterious Synonymous Mutation in Nuclear DNA 1
Query Builder perform simple or advance query on MitoLSDB data 1
Remove beginning of a file 1
Replace parts of text 11
Replace Text in entire line 11
Replace Text in a specific column 11
Reverse Complement a MAF file 1
SDF to CML 3
SDF to InChI 3
SDF to mol2 3
SDF to SMILES 3
Search in textfiles (grep) 10
Search result to GFF converts the output of Search into gff file format 1
Search result to VCF like tabular converts the output of Search into VCF like tabular format 1
Secure Hash / Message Digest on a dataset 2
Select lines that match an expression Filtering 3
Select first lines from a dataset Filtering 3
Select first lines from a dataset (head) 8
Select last lines from a dataset 2
Select last lines from a dataset (tail) 8
Select random lines from a file 2
Send to cloud 1
Sequence retrieval retieves the sequence from rCRS using coordinates 1
SFF converter 1
SIFT prediction on all possible SNPs of mtDNA and nDNA encoded mitochondrial proteins 1
SIFT(under_testing) prediction on all possible SNPs of mtDNA and nDNA encoded mitochondrial proteins 1
SMILES to CML 3
SMILES to InChI 3
SMILES to MOL 3
SMILES to MOL2 3
SMILES to SDF 3
SMILES to SMILES 3
SNPScore Output to GFF converts the output of SNPscore results into gff file format 1
Sort data in ascending or descending order 3
Sort data in ascending or descending order 10
Sort a row according to their columns 11
Stitch Gene blocks given a set of coding exon intervals 4
Stitch MAF blocks given a set of genomic intervals 1
Summary Statistics for any numerical column 3
Support vector machines (SVMs) for classification 12
tac reverse a file (reverse cat) 8
Text reformatting with awk 12
Text transformation with sed 10
Trim leading or trailing characters 2
Unfold columns from a table 10
Unique occurrences of each record 8
Unique lines assuming sorted input file 10
Upload File from your computer Query and retrieval 3
VCF like tabular to Genewise like csv converts a vcf like tabular file to gw file format 1
VCF like tabular to GFF converts a vcf like tabular file to gff file format 1
VCF to MAF Custom Track for display at UCSC 2
Wig/BedGraph-to-bigWig converter 2
Wiggle to Interval 2
Wiggle-to-Interval converter 2