92 tool(s) found

Tool Description Topics Available version(s)
Add column to an existing dataset Editing 2
Aggregate datapoints Appends the average, min, max of datapoints per interval 2
AXT to concatenated FASTA Converts an AXT formatted file to a concatenated FASTA alignment Conversion 1
AXT to FASTA Converts an AXT formatted file to FASTA format Conversion 1
AXT to LAV Converts an AXT formatted file to LAV format Conversion 1
Bar chart for multiple columns 2
BED-to-bigBed converter Conversion 2
BED-to-GFF converter Conversion 2
Bowtie2 Extended is a short-read aligner 1
Boxplot of quality statistics 2
Change Case of selected columns 2
Compare two Datasets to find common or distinct rows Filtering 1
Compute quality statistics for SOLiD data 1
Concatenate datasets tail-to-head Aggregation 1
Convert delimiters to TAB 1
Convert SOLiD output to fastq 1
Convert BED to Feature Location Index 1
Convert BED to GFF 2
Convert FASTA to 2bit 2
Convert FASTA to Bowtie base space Index 2
Convert FASTA to Bowtie color space Index 2
Convert FASTA to len file 2
Convert FASTA to Tabular 1
Convert genome coordinates between assemblies and genomes 2
Convert Genomic Intervals To BED 1
Convert Genomic Intervals To Coverage 2
Convert Genomic Intervals To Strict BED 2
Convert Genomic Intervals To Strict BED12 1
Convert Genomic Intervals To Strict BED6 2
Convert GFF to BED 2
Convert GFF to Feature Location Index 1
Convert Len file to Linecount 2
Convert lped to fped 2
Convert lped to plink pbed 2
Convert MAF to Fasta 2
Convert MAF to Genomic Intervals 2
Convert Picard Interval List to BED6 converter 2
Convert plink pbed to ld reduced format 2
Convert plink pbed to linkage lped 2
Count occurrences of each record 2
Create single interval as a new dataset 1
Cut columns from a table Filtering 2
Data Fetch Query and retrieval 1
DESeq2 Determines differentially expressed features from count tables 1
Draw quality score boxplot for SOLiD data 1
Extract features from GFF data 1
Extract Genomic DNA using coordinates from assembled/unassembled genomes 7
Extract MAF blocks given a set of genomic intervals 3
Extract MAF by block number given a set of block numbers and a MAF file 1
Extract Pairwise MAF blocks given a set of genomic intervals 1
Filter data on any column using simple expressions Formatting 2
Filter GFF data by attribute using simple expressions 3
Filter GFF data by feature count using simple expressions 2
Filter GTF data by attribute values_list 2
Filter MAF by specified attributes 1
Filter MAF blocks by Species 1
Filter MAF blocks by Size 1
Gene BED To Exon/Intron/Codon BED expander 1
Get Microbial Data Query and retrieval 1
GFF-to-BED converter Conversion 2
Group data by a column and perform aggregate operation on other columns. 4
GTF-to-BEDGraph converter Conversion 1
Join MAF blocks by Species 1
Join two Datasets side by side on a specified field 4
LAJ Pairwise Alignment Viewer 1
LAV to BED Converts a LAV formatted file to BED format 1
Line/Word/Character count of a dataset 1
MAF Coverage Stats Alignment coverage information 3
MAF to BED Converts a MAF formatted file to the BED format 1
MAF to FASTA Converts a MAF formatted file to FASTA format 1
MAF to Interval Converts a MAF formatted file to the Interval format 1
Merge Columns together 4
Paste two files side by side 1
Remove beginning of a file 1
Reverse Complement a MAF file 1
Secure Hash / Message Digest on a dataset 2
Select lines that match an expression Filtering 3
Select first lines from a dataset Filtering 3
Select last lines from a dataset 2
Select random lines from a file 2
SFF converter 1
Simulate Illumina runs 1
Sort data in ascending or descending order 3
Split MAF blocks by Species 1
Stitch Gene blocks given a set of coding exon intervals 4
Stitch MAF blocks given a set of genomic intervals 1
Summary Statistics for any numerical column 3
Trim leading or trailing characters 2
Upload File from your computer Query and retrieval 3
VCF to MAF Custom Track for display at UCSC 2
Wig/BedGraph-to-bigWig converter 2
Wiggle to Interval 2