| Add column |
to an existing dataset |
Editing
|
2 |
| Aggregate datapoints |
Appends the average, min, max of datapoints per interval |
|
2 |
| AXT to concatenated FASTA |
Converts an AXT formatted file to a concatenated FASTA alignment |
Conversion
|
1 |
| AXT to FASTA |
Converts an AXT formatted file to FASTA format |
Conversion
|
1 |
| AXT to LAV |
Converts an AXT formatted file to LAV format |
Conversion
|
1 |
| Bar chart |
for multiple columns |
|
2 |
| BED-to-bigBed |
converter |
Conversion
|
2 |
| BED-to-GFF |
converter |
Conversion
|
1 |
| Bowtie2 Extended |
is a short-read aligner |
|
1 |
| Boxplot |
of quality statistics |
|
2 |
| Change Case |
of selected columns |
|
2 |
| Compare two Datasets |
to find common or distinct rows |
Filtering
|
1 |
| Compute quality statistics |
for SOLiD data |
|
1 |
| Concatenate datasets |
tail-to-head |
Aggregation
|
1 |
| Convert |
delimiters to TAB |
|
1 |
| Convert |
SOLiD output to fastq |
|
1 |
| Convert BED to Feature Location Index |
|
|
1 |
| Convert BED to GFF |
|
|
2 |
| Convert FASTA to 2bit |
|
|
2 |
| Convert FASTA to Bowtie base space Index |
|
|
2 |
| Convert FASTA to Bowtie color space Index |
|
|
2 |
| Convert FASTA to len file |
|
|
2 |
| Convert FASTA to Tabular |
|
|
1 |
| Convert genome coordinates |
between assemblies and genomes |
|
2 |
| Convert Genomic Intervals To BED |
|
|
1 |
| Convert Genomic Intervals To Coverage |
|
|
2 |
| Convert Genomic Intervals To Strict BED |
|
|
2 |
| Convert Genomic Intervals To Strict BED12 |
|
|
1 |
| Convert Genomic Intervals To Strict BED6 |
|
|
2 |
| Convert GFF to BED |
|
|
2 |
| Convert GFF to Feature Location Index |
|
|
1 |
| Convert Len file to Linecount |
|
|
2 |
| Convert lped to fped |
|
|
2 |
| Convert lped to plink pbed |
|
|
2 |
| Convert MAF to Fasta |
|
|
2 |
| Convert MAF to Genomic Intervals |
|
|
2 |
| Convert Picard Interval List to BED6 |
converter |
|
2 |
| Convert plink pbed to ld reduced format |
|
|
2 |
| Convert plink pbed to linkage lped |
|
|
2 |
| Count |
occurrences of each record |
|
2 |
| Create single interval |
as a new dataset |
|
1 |
| Cut |
columns from a table |
Filtering
|
2 |
| Data Fetch |
|
Query and retrieval
|
1 |
| DESeq2 |
Determines differentially expressed features from count tables |
|
1 |
| Draw quality score boxplot |
for SOLiD data |
|
1 |
| Extract features |
from GFF data |
|
1 |
| Extract Genomic DNA |
using coordinates from assembled/unassembled genomes |
|
7 |
| Extract MAF blocks |
given a set of genomic intervals |
|
4 |
| Extract MAF by block number |
given a set of block numbers and a MAF file |
|
1 |
| Extract Pairwise MAF blocks |
given a set of genomic intervals |
|
1 |
| Filter |
data on any column using simple expressions |
Formatting
|
2 |
| Filter GFF data by attribute |
using simple expressions |
|
2 |
| Filter GFF data by feature count |
using simple expressions |
|
1 |
| Filter GTF data by attribute values_list |
|
|
2 |
| Filter MAF |
by specified attributes |
|
1 |
| Filter MAF blocks |
by Species |
|
1 |
| Filter MAF blocks |
by Size |
|
1 |
| Gene BED To Exon/Intron/Codon BED |
expander |
|
1 |
| Get Microbial Data |
|
Query and retrieval
|
1 |
| GFF-to-BED |
converter |
Conversion
|
1 |
| Group |
data by a column and perform aggregate operation on other columns. |
|
4 |
| GTF-to-BEDGraph |
converter |
Conversion
|
1 |
| Join MAF blocks |
by Species |
|
1 |
| Join two Datasets |
side by side on a specified field |
|
4 |
| LAJ |
Pairwise Alignment Viewer |
|
1 |
| LAV to BED |
Converts a LAV formatted file to BED format |
|
1 |
| Line/Word/Character count |
of a dataset |
|
1 |
| MAF Coverage Stats |
Alignment coverage information |
|
3 |
| MAF to BED |
Converts a MAF formatted file to the BED format |
|
1 |
| MAF to FASTA |
Converts a MAF formatted file to FASTA format |
|
1 |
| MAF to Interval |
Converts a MAF formatted file to the Interval format |
|
1 |
| Merge Columns |
together |
|
4 |
| Paste |
two files side by side |
|
1 |
| Remove beginning |
of a file |
|
1 |
| Reverse Complement |
a MAF file |
|
1 |
| Secure Hash / Message Digest |
on a dataset |
|
2 |
| Select |
lines that match an expression |
Filtering
|
3 |
| Select first |
lines from a dataset |
Filtering
|
4 |
| Select last |
lines from a dataset |
|
2 |
| Select random lines |
from a file |
|
2 |
| SFF converter |
|
|
1 |
| Simulate |
Illumina runs |
|
1 |
| Sort |
data in ascending or descending order |
Sorting
|
3 |
| Split MAF blocks |
by Species |
|
1 |
| Stitch Gene blocks |
given a set of coding exon intervals |
|
4 |
| Stitch MAF blocks |
given a set of genomic intervals |
|
1 |
| Summary Statistics |
for any numerical column |
|
3 |
| Trim |
leading or trailing characters |
|
2 |
| Upload File |
from your computer |
Query and retrieval
|
3 |
| VCF to MAF Custom Track |
for display at UCSC |
|
2 |
| Wig/BedGraph-to-bigWig |
converter |
|
2 |
| Wiggle to Interval |
|
|
2 |