111 tool(s) found

Tool Description Topics Available version(s)
CML to InChI 3
CML to mol2 3
CML to SDF 3
CML to SMILES 3
Convert BCF to uncompressed BCF 1
Convert BED to Feature Location Index 1
Convert BED to GFF 2
Convert Biom1 to Biom2 1
Convert Biom2 to Biom1 1
Convert CSV to tabular 1
Convert FASTA to 2bit 2
Convert FASTA to Bowtie base space Index 2
Convert FASTA to Bowtie color space Index 2
Convert FASTA to fai file 1
Convert FASTA to len file 2
Convert FASTA to Tabular 1
Convert Genomic Intervals To BED 1
Convert Genomic Intervals To Coverage 2
Convert Genomic Intervals To Strict BED 2
Convert Genomic Intervals To Strict BED12 1
Convert Genomic Intervals To Strict BED6 2
Convert GFF to BED 2
Convert GFF to Feature Location Index 1
Convert Len file to Linecount 2
Convert lped to fped 2
Convert lped to plink pbed 2
Convert MAF to Fasta 2
Convert MAF to Genomic Intervals 2
Convert Picard Interval List to BED6 converter 2
Convert plink pbed to ld reduced format 2
Convert plink pbed to linkage lped 2
Convert Ref taxonomy to Seq Taxonomy converts 2 or 3 column sequence taxonomy file to a 2 column mothur taxonomy_outline format 2
Convert SAM to BAM without sorting 1
Convert sif file to adjacent matrix 1
Convert sif file to bipartite matrix 1
Convert tabular to CSV 1
Convert tabular to dbnsfp 2
Convert tar to directory 2
Convert uncompressed BCF to BCF 1
Data Fetch Query and retrieval 1
Data Location Data location in the galaxy server 1
Degree distribution Fits functions to cumulative degree distributions of both trophic levels of a network 1
File Compression Compress file into smaller size 1
Fitting Power law models regular power law, log power law, exponential law and truncated power law 1
Fitting Power law models regular power law, log power law, exponential law and truncated power law 1
Generate networks from LSA Network matrix and output for visualization from LSA results 1
Generate networks from LSA Bipartite network matrix and output for visualization from LSA results 1
Generate networks from RMT-based correlations To generate network according to a cutoff 1
Generate networks from RMT-based correlations To generate network according to a cutoff 1
Generate networks from SparCC Network matrix and output for visualization from SparCC results 1
Generate networks from SparCC Bipartite network matrix and output for visualization from SparCC results 1
Generate networks from Spiec-Easi Network matrix and output for visualization from Spiec-Easi 1
Generate networks from Spiec-Easi Network matrix and output for visualization from Spiec-Easi 1
Generate node attribute for visualization 1
Generate node attribute for visualization To generate node attribute file for Cytoscape/Gephi visualization 1
Global Network Properties and Individual Nodes' Centrality 1
InChI to CML 3
InChI to MOL 3
InChI to MOL2 3
InChI to SDF 3
InChI to SMILES 3
Individual node property Calculate the node properties for higher and lower trophic level species 1
LA filter LA filter with LA,q and Q score 1
LA_calculation Extended Liquid Association Analysis Tools 1
LSA query and interaction relation LSA query selection and output for the relation added in the final column 1
LSA_calculation Extended Local Similarity Analysis computation 1
majority_selection Manually filtration the input table by removing the lower detected OTUs or species 1
majority_selection Manually filtration the input table by removing the lower detected OTUs or species 1
majority_selection Manually filtration the input table by removing the lower detected OTUs or species 1
majority_selection Manually filtration the input table by removing the lower detected OTUs or species 1
majority_selection Manually filtration the input table by removing the lower detected OTUs or species 1
majority_selection Manually filtration the input table by removing the lower detected OTUs or species 1
majority_selection Manually filtration the input table by removing the lower detected OTUs or species 1
Mantel Test Do mantel test between GS and environmental factors 1
Mantel Test Do mantel test between GS and environmental factors 1
Merge Files Merge two files 1
Module separation and module hubs Modularization and Z-P result for module hubs 1
Module separation and module hubs Modularization and Z-P result for module hubs with bipartite network 1
Module-EigenGene Analysis Module-EigenGene calculation with environmental factors 1
Module-EigenGene Analysis(Bipartite network) Module-EigenGene calculation with environmental factors 1
MOL to CML 3
MOL to MOL2 3
MOL to SMILES 3
MOL2 to CML 3
MOL2 to InChI 3
MOL2 to MOL 3
MOL2 to SDF 3
MOL2 to SMILES 3
Network property for bipartite matrix Calculate the network indices for pure network level, higher and lower level 1
Network property for bipartite matrix at grouplevel Calculate the network indices for higher and lower level 1
OTU/Gene Significance with Environmental Factors (Bipartite network) Caculate the correlation between OTU/Gene Significance with Environmental Factors 1
Random Matrix Theory (cutoff) To show the cutoff using adjacent matrix 1
Randomization of adjacent networks Random rewire the network 1
Randomization of bipartite networks Calculate the network properties and modularity based on ramdon networks 1
SDF to CML 3
SDF to InChI 3
SDF to mol2 3
SDF to SMILES 3
Similarity matrix calculation To calculate the Pearson/Spearman correlation coefficient among all OTUs 1
SMILES to CML 3
SMILES to InChI 3
SMILES to MOL 3
SMILES to MOL2 3
SMILES to SDF 3
SMILES to SMILES 3
SparCC correlation and p-value calculation Computing correlations in compositional data (16S, metagenomics, etc) and estimating pseudo p-values via a bootstrap procedure. 1
SparCC correlation and p-value calculation (FastSpar) Fast version of SparCC 1
SpiecEasi calculation Generate inverse covariance matrix or coefficient matrix from SpiecEasi 1
Taxonomy summary of low level species for bipartite networks Taxonomy summary for higher trophic level species at different levels 1
Upload File from your computer Query and retrieval 3
Wiggle to Interval 2