CML to InChI 


3 
CML to mol2 


3 
CML to SDF 


3 
CML to SMILES 


3 
Convert BCF to uncompressed BCF 


1 
Convert BED to Feature Location Index 


1 
Convert BED to GFF 


2 
Convert Biom1 to Biom2 


1 
Convert Biom2 to Biom1 


1 
Convert CSV to tabular 


1 
Convert FASTA to 2bit 


2 
Convert FASTA to Bowtie base space Index 


2 
Convert FASTA to Bowtie color space Index 


2 
Convert FASTA to fai file 


1 
Convert FASTA to len file 


2 
Convert FASTA to Tabular 


1 
Convert Genomic Intervals To BED 


1 
Convert Genomic Intervals To Coverage 


2 
Convert Genomic Intervals To Strict BED 


2 
Convert Genomic Intervals To Strict BED12 


1 
Convert Genomic Intervals To Strict BED6 


2 
Convert GFF to BED 


2 
Convert GFF to Feature Location Index 


1 
Convert Len file to Linecount 


2 
Convert lped to fped 


2 
Convert lped to plink pbed 


2 
Convert MAF to Fasta 


2 
Convert MAF to Genomic Intervals 


2 
Convert Picard Interval List to BED6 
converter 

2 
Convert plink pbed to ld reduced format 


2 
Convert plink pbed to linkage lped 


2 
Convert Ref taxonomy to Seq Taxonomy 
converts 2 or 3 column sequence taxonomy file to a 2 column mothur taxonomy_outline format 

2 
Convert SAM to BAM without sorting 


1 
Convert sif file to adjacent matrix 


1 
Convert sif file to bipartite matrix 


1 
Convert tabular to CSV 


1 
Convert tabular to dbnsfp 


2 
Convert tar to directory 


2 
Convert uncompressed BCF to BCF 


1 
Data Fetch 

Query and retrieval

1 
Data Location 
Data location in the galaxy server 

1 
Degree distribution 
Fits functions to cumulative degree distributions of both trophic levels of a network 

1 
File Compression 
Compress file into smaller size 

1 
Fitting Power law models 
regular power law, log power law, exponential law and truncated power law 

1 
Fitting Power law models 
regular power law, log power law, exponential law and truncated power law 

1 
Generate networks from LSA 
Network matrix and output for visualization from LSA results 

1 
Generate networks from LSA 
Bipartite network matrix and output for visualization from LSA results 

1 
Generate networks from RMTbased correlations 
To generate network according to a cutoff 

1 
Generate networks from RMTbased correlations 
To generate network according to a cutoff 

1 
Generate networks from SparCC 
Network matrix and output for visualization from SparCC results 

1 
Generate networks from SparCC 
Bipartite network matrix and output for visualization from SparCC results 

1 
Generate networks from SpiecEasi 
Network matrix and output for visualization from SpiecEasi 

1 
Generate networks from SpiecEasi 
Network matrix and output for visualization from SpiecEasi 

1 
Generate node attribute for visualization 


1 
Generate node attribute for visualization 
To generate node attribute file for Cytoscape/Gephi visualization 

1 
Global Network Properties and Individual Nodes' Centrality 


1 
InChI to CML 


3 
InChI to MOL 


3 
InChI to MOL2 


3 
InChI to SDF 


3 
InChI to SMILES 


3 
Individual node property 
Calculate the node properties for higher and lower trophic level species 

1 
LA filter 
LA filter with LA,q and Q score 

1 
LA_calculation 
Extended Liquid Association Analysis Tools 

1 
LSA query and interaction relation 
LSA query selection and output for the relation added in the final column 

1 
LSA_calculation 
Extended Local Similarity Analysis computation 

1 
majority_selection 
Manually filtration the input table by removing the lower detected OTUs or species 

1 
majority_selection 
Manually filtration the input table by removing the lower detected OTUs or species 

1 
majority_selection 
Manually filtration the input table by removing the lower detected OTUs or species 

1 
majority_selection 
Manually filtration the input table by removing the lower detected OTUs or species 

1 
majority_selection 
Manually filtration the input table by removing the lower detected OTUs or species 

1 
majority_selection 
Manually filtration the input table by removing the lower detected OTUs or species 

1 
majority_selection 
Manually filtration the input table by removing the lower detected OTUs or species 

1 
Mantel Test 
Do mantel test between GS and environmental factors 

1 
Mantel Test 
Do mantel test between GS and environmental factors 

1 
Merge Files 
Merge two files 

1 
Module separation and module hubs 
Modularization and ZP result for module hubs 

1 
Module separation and module hubs 
Modularization and ZP result for module hubs with bipartite network 

1 
ModuleEigenGene Analysis 
ModuleEigenGene calculation with environmental factors 

1 
ModuleEigenGene Analysis(Bipartite network) 
ModuleEigenGene calculation with environmental factors 

1 
MOL to CML 


3 
MOL to MOL2 


3 
MOL to SMILES 


3 
MOL2 to CML 


3 
MOL2 to InChI 


3 
MOL2 to MOL 


3 
MOL2 to SDF 


3 
MOL2 to SMILES 


3 
Network property for bipartite matrix 
Calculate the network indices for pure network level, higher and lower level 

1 
Network property for bipartite matrix at grouplevel 
Calculate the network indices for higher and lower level 

1 
OTU/Gene Significance with Environmental Factors (Bipartite network) 
Caculate the correlation between OTU/Gene Significance with Environmental Factors 

1 
Random Matrix Theory (cutoff) 
To show the cutoff using adjacent matrix 

1 
Randomization of adjacent networks 
Random rewire the network 

1 
Randomization of bipartite networks 
Calculate the network properties and modularity based on ramdon networks 

1 
SDF to CML 


3 
SDF to InChI 


3 
SDF to mol2 


3 
SDF to SMILES 


3 
Similarity matrix calculation 
To calculate the Pearson/Spearman correlation coefficient among all OTUs 

1 
SMILES to CML 


3 
SMILES to InChI 


3 
SMILES to MOL 


3 
SMILES to MOL2 


3 
SMILES to SDF 


3 
SMILES to SMILES 


3 
SparCC correlation and pvalue calculation 
Computing correlations in compositional data (16S, metagenomics, etc) and estimating pseudo pvalues via a bootstrap procedure. 

1 
SparCC correlation and pvalue calculation (FastSpar) 
Fast version of SparCC 

1 
SpiecEasi calculation 
Generate inverse covariance matrix or coefficient matrix from SpiecEasi 

1 
Taxonomy summary of low level species for bipartite networks 
Taxonomy summary for higher trophic level species at different levels 

1 
Upload File 
from your computer 
Query and retrieval

3 
Wiggle to Interval 


2 