| CML to InChI |
|
|
3 |
| CML to mol2 |
|
|
3 |
| CML to SDF |
|
|
3 |
| CML to SMILES |
|
|
3 |
| Convert BCF to uncompressed BCF |
|
|
1 |
| Convert BED to Feature Location Index |
|
|
1 |
| Convert BED to GFF |
|
|
2 |
| Convert Biom1 to Biom2 |
|
|
1 |
| Convert Biom2 to Biom1 |
|
|
1 |
| Convert CSV to tabular |
|
|
1 |
| Convert FASTA to 2bit |
|
|
2 |
| Convert FASTA to Bowtie base space Index |
|
|
2 |
| Convert FASTA to Bowtie color space Index |
|
|
2 |
| Convert FASTA to fai file |
|
|
1 |
| Convert FASTA to len file |
|
|
2 |
| Convert FASTA to Tabular |
|
|
1 |
| Convert Genomic Intervals To BED |
|
|
1 |
| Convert Genomic Intervals To Coverage |
|
|
2 |
| Convert Genomic Intervals To Strict BED |
|
|
2 |
| Convert Genomic Intervals To Strict BED12 |
|
|
1 |
| Convert Genomic Intervals To Strict BED6 |
|
|
2 |
| Convert GFF to BED |
|
|
2 |
| Convert GFF to Feature Location Index |
|
|
1 |
| Convert Len file to Linecount |
|
|
2 |
| Convert lped to fped |
|
|
2 |
| Convert lped to plink pbed |
|
|
2 |
| Convert MAF to Fasta |
|
|
2 |
| Convert MAF to Genomic Intervals |
|
|
2 |
| Convert Picard Interval List to BED6 |
converter |
|
2 |
| Convert plink pbed to ld reduced format |
|
|
2 |
| Convert plink pbed to linkage lped |
|
|
2 |
| Convert Ref taxonomy to Seq Taxonomy |
converts 2 or 3 column sequence taxonomy file to a 2 column mothur taxonomy_outline format |
|
2 |
| Convert SAM to BAM without sorting |
|
|
1 |
| Convert sif file to adjacent matrix |
|
|
1 |
| Convert sif file to bipartite matrix |
|
|
1 |
| Convert tabular to CSV |
|
|
1 |
| Convert tabular to dbnsfp |
|
|
2 |
| Convert tar to directory |
|
|
2 |
| Convert uncompressed BCF to BCF |
|
|
1 |
| Data Fetch |
|
Query and retrieval
|
1 |
| Data Location |
Data location in the galaxy server |
|
1 |
| Degree distribution |
Fits functions to cumulative degree distributions of both trophic levels of a network |
|
1 |
| File Compression |
Compress file into smaller size |
|
1 |
| Fitting Power law models |
regular power law, log power law, exponential law and truncated power law |
|
1 |
| Fitting Power law models |
regular power law, log power law, exponential law and truncated power law |
|
1 |
| Generate networks from LSA |
Network matrix and output for visualization from LSA results |
|
1 |
| Generate networks from LSA |
Bipartite network matrix and output for visualization from LSA results |
|
1 |
| Generate networks from RMT-based correlations |
To generate network according to a cutoff |
|
1 |
| Generate networks from RMT-based correlations |
To generate network according to a cutoff |
|
1 |
| Generate networks from SparCC |
Network matrix and output for visualization from SparCC results |
|
1 |
| Generate networks from SparCC |
Bipartite network matrix and output for visualization from SparCC results |
|
1 |
| Generate networks from Spiec-Easi |
Network matrix and output for visualization from Spiec-Easi |
|
1 |
| Generate networks from Spiec-Easi |
Network matrix and output for visualization from Spiec-Easi |
|
1 |
| Generate node attribute for visualization |
|
|
1 |
| Generate node attribute for visualization |
To generate node attribute file for Cytoscape/Gephi visualization |
|
1 |
| Global Network Properties and Individual Nodes' Centrality |
|
|
1 |
| InChI to CML |
|
|
3 |
| InChI to MOL |
|
|
3 |
| InChI to MOL2 |
|
|
3 |
| InChI to SDF |
|
|
3 |
| InChI to SMILES |
|
|
3 |
| Individual node property |
Calculate the node properties for higher and lower trophic level species |
|
1 |
| LA filter |
LA filter with LA,q and Q score |
|
1 |
| LA_calculation |
Extended Liquid Association Analysis Tools |
|
1 |
| LSA query and interaction relation |
LSA query selection and output for the relation added in the final column |
|
1 |
| LSA_calculation |
Extended Local Similarity Analysis computation |
|
1 |
| majority_selection |
Manually filtration the input table by removing the lower detected OTUs or species |
|
1 |
| majority_selection |
Manually filtration the input table by removing the lower detected OTUs or species |
|
1 |
| majority_selection |
Manually filtration the input table by removing the lower detected OTUs or species |
|
1 |
| majority_selection |
Manually filtration the input table by removing the lower detected OTUs or species |
|
1 |
| majority_selection |
Manually filtration the input table by removing the lower detected OTUs or species |
|
1 |
| majority_selection |
Manually filtration the input table by removing the lower detected OTUs or species |
|
1 |
| majority_selection |
Manually filtration the input table by removing the lower detected OTUs or species |
|
1 |
| Mantel Test |
Do mantel test between GS and environmental factors |
|
1 |
| Mantel Test |
Do mantel test between GS and environmental factors |
|
1 |
| Merge Files |
Merge two files |
|
1 |
| Module separation and module hubs |
Modularization and Z-P result for module hubs |
|
1 |
| Module separation and module hubs |
Modularization and Z-P result for module hubs with bipartite network |
|
1 |
| Module-EigenGene Analysis |
Module-EigenGene calculation with environmental factors |
|
1 |
| Module-EigenGene Analysis(Bipartite network) |
Module-EigenGene calculation with environmental factors |
|
1 |
| MOL to CML |
|
|
3 |
| MOL to MOL2 |
|
|
3 |
| MOL to SMILES |
|
|
3 |
| MOL2 to CML |
|
|
3 |
| MOL2 to InChI |
|
|
3 |
| MOL2 to MOL |
|
|
3 |
| MOL2 to SDF |
|
|
3 |
| MOL2 to SMILES |
|
|
3 |
| Network property for bipartite matrix |
Calculate the network indices for pure network level, higher and lower level |
|
1 |
| Network property for bipartite matrix at grouplevel |
Calculate the network indices for higher and lower level |
|
1 |
| OTU/Gene Significance with Environmental Factors (Bipartite network) |
Caculate the correlation between OTU/Gene Significance with Environmental Factors |
|
1 |
| Random Matrix Theory (cutoff) |
To show the cutoff using adjacent matrix |
|
1 |
| Randomization of adjacent networks |
Random rewire the network |
|
1 |
| Randomization of bipartite networks |
Calculate the network properties and modularity based on ramdon networks |
|
1 |
| SDF to CML |
|
|
3 |
| SDF to InChI |
|
|
3 |
| SDF to mol2 |
|
|
3 |
| SDF to SMILES |
|
|
3 |
| Similarity matrix calculation |
To calculate the Pearson/Spearman correlation coefficient among all OTUs |
|
1 |
| SMILES to CML |
|
|
3 |
| SMILES to InChI |
|
|
3 |
| SMILES to MOL |
|
|
3 |
| SMILES to MOL2 |
|
|
3 |
| SMILES to SDF |
|
|
3 |
| SMILES to SMILES |
|
|
3 |
| SparCC correlation and p-value calculation |
Computing correlations in compositional data (16S, metagenomics, etc) and estimating pseudo p-values via a bootstrap procedure. |
|
1 |
| SparCC correlation and p-value calculation (FastSpar) |
Fast version of SparCC |
|
1 |
| SpiecEasi calculation |
Generate inverse covariance matrix or coefficient matrix from SpiecEasi |
|
1 |
| Taxonomy summary of low level species for bipartite networks |
Taxonomy summary for higher trophic level species at different levels |
|
1 |
| Upload File |
from your computer |
Query and retrieval
|
3 |
| Wiggle to Interval |
|
|
2 |