htseq-count - Count aligned reads in a BAM file that overlap features in a GFF file

htseq_count

Version	Tool Shed	Owner	Galaxy instances where the tool is available
0.9.1+galaxy1	toolshed.g2.bx.psu.edu	lparsons	https://galaxy.migale.inra.fr
0.9.1	toolshed.g2.bx.psu.edu	lparsons	https://usegalaxy.org/
0.9.1	toolshed.g2.bx.psu.edu	lparsons	https://bioinf-galaxian.erasmusmc.nl/galaxy/ https://bipaa-galaxy.genouest.org https://galaxy.genouest.org https://galaxy.migale.inra.fr https://mississippi.snv.jussieu.fr/ https://usegalaxy.eu https://usegalaxy.fr https://usegalaxy.org.au/
0.6.1galaxy3	Tool version not installed from a tool shed. It may not be suitable for reproducible research.	?	http://galaxy.prabi.fr/
0.6.1galaxy3	toolshed.g2.bx.psu.edu	lparsons	https://galaxy.genouest.org https://usegalaxy.eu https://usegalaxy.org.au/ https://usegalaxy.org/
0.6.1galaxy2	toolshed.g2.bx.psu.edu	lparsons	https://galaxy.sb-roscoff.fr/ https://usegalaxy.eu
0.6.1galaxy1	toolshed.g2.bx.psu.edu	lparsons	https://usegalaxy.eu https://usegalaxy.org/
0.6.1	toolshed.galaxeast.fr	velt	http://use.galaxeast.fr
0.4.1	toolshed.g2.bx.psu.edu	lparsons	https://usegalaxy.eu