9 tool(s) found

Tool Description Topics Available version(s)
MACS2 bdgbroadcall Call broad peaks from bedGraph output Regulatory element prediction 7
MACS2 bdgcmp Deduct noise by comparing two signal tracks in bedGraph Regulatory element prediction 7
MACS2 bdgdiff Differential peak detection based on paired four bedgraph files Regulatory element prediction 8
MACS2 bdgpeakcall Call peaks from bedGraph output Regulatory element prediction 7
MACS2 callpeak Call peaks from alignment results Regulatory element prediction 10
MACS2 filterdup Remove duplicate reads at the same position Regulatory element prediction 7
MACS2 predictd Predict 'd' or fragment size from alignment results Regulatory element prediction 7
MACS2 randsample Randomly sample number or percentage of total reads Regulatory element prediction 7
MACS2 refinepeak Refine peak summits and give scores measuring balance of forward- backward tags (Experimental) Regulatory element prediction 7